Index

A

agg_clust() (in module clustviz.agglomerative) annotate_points() (in module clustviz.utils) assign_cluster() (in module clustviz.denclue)

assignment_phase_large_cure() (in module clustviz.cure) average_cost() (ClaraClustering method) avg_dist() (in module clustviz.agglomerative)

B

birch (class in clustviz.birch)

bisection_weights() (in module clustviz.chameleon.graphtools) build_initial_matrices() (in module clustviz.utils)

C

calculate_distance_of_clusters() (KMedoids method) calculate_inter_cluster_distance() (KMedoids method) center_of_mass() (in module clustviz.denclue) cftree (class in clustviz.birch) cheat_at_sampling() (ClaraClustering method) check_border_points_rectangles() (in module clustviz.denclue) check_connection() (in module clustviz.denclue) chernoffBounds() (in module clustviz.utils) cl_dist() (in module clustviz.agglomerative) clara() (ClaraClustering method) ClaraClustering (class in clustviz.clara) clarans (class in clustviz.clarans) cluster() (in module clustviz.chameleon.chameleon) cluster2() (in module clustviz.chameleon.chameleon2) cluster_points() (in module clustviz.utils) clustviz module clustviz.agglomerative module clustviz.birch module clustviz.chameleon module clustviz.chameleon.chameleon module clustviz.chameleon.chameleon2 module clustviz.chameleon.graphtools module

clustviz.clara module clustviz.clarans module clustviz.cure module clustviz.dbscan module clustviz.denclue module clustviz.optics module clustviz.pam module clustviz.utils module compute_cost() (ClaraClustering method) compute_cost_clarans() (in module clustviz.clarans) compute_var() (in module clustviz.agglomerative) compute_var_sing() (in module clustviz.agglomerative) compute_ward_ij() (in module clustviz.agglomerative) connected_components() (in module clustviz.chameleon.chameleon2) connecting_edges() (in module clustviz.chameleon.graphtools) convert_colors() (in module clustviz.utils) cosine_distance() (ClaraClustering static method) CubeInfo (in module clustviz.denclue) Cubes (in module clustviz.denclue) CubesCoords (in module clustviz.denclue) cure() (in module clustviz.cure) cure_sample_part() (in module clustviz.cure)

D

DBSCAN() (in module clustviz.dbscan) demo_parameters() (in module clustviz.cure) DENCLUE() (in module clustviz.denclue) dendrogram_height() (in module clustviz.chameleon.chameleon2) density_attractor() (in module clustviz.denclue) dist1() (in module clustviz.utils)

dist2() (in module clustviz.utils) dist_clust_cure() (in module clustviz.cure) dist_mat() (in module clustviz.agglomerative) dist_mat_gen() (in module clustviz.agglomerative) dist_mat_gen_cure() (in module clustviz.cure) draw_rectangle_or_encircle() (in module clustviz.utils)

E

encircle() (in module clustviz.utils) euclidean_distance() (ClaraClustering static method) (in module clustviz.utils)

extract_cluster_labels() (in module clustviz.denclue) extract_optimal_n_clust() (in module clustviz.chameleon.chameleon2) ExtractDBSCANclust() (in module clustviz.optics)

F

fast_euclidean() (ClaraClustering static method) find_bigger_jump() (in module clustviz.chameleon.chameleon2) find_connected_cubes() (in module clustviz.denclue) find_nearest_height() (in module clustviz.chameleon.chameleon2) FindPoint() (in module clustviz.denclue) FindRect() (in module clustviz.denclue)

first_jump_cutoff() (in module clustviz.chameleon.chameleon2) fit() (KMedoids method) flatten_list() (in module clustviz.utils) flood_fill() (in module clustviz.chameleon.chameleon2) form_new_cluster() (in module clustviz.cure) form_populated_cubes() (in module clustviz.denclue)

G

gaussian_density() (in module clustviz.denclue) gaussian_influence() (in module clustviz.denclue)

get_cluster() (in module clustviz.chameleon.graphtools) get_weights() (in module clustviz.chameleon.graphtools) gradient_gaussian_density() (in module clustviz.denclue)

H

highly_pop_cubes() (in module clustviz.denclue)

I

insert() (cftree method)

internal_closeness() (in module clustviz.chameleon.chameleon) internal_interconnectivity() (in module clustviz.chameleon.chameleon)

K

k_medoids() (ClaraClustering method)

KMedoids (class in clustviz.pam) knn_graph() (in module clustviz.chameleon.graphtools)

L

len_edges() (in module clustviz.chameleon.chameleon)

M

manhattan_distance() (ClaraClustering static method) merge_best() (in module clustviz.chameleon.chameleon) merge_best2() (in module clustviz.chameleon.chameleon2) merge_score() (in module clustviz.chameleon.chameleon) merge_score2() (in module clustviz.chameleon.chameleon2) min_cut_bisector() (in module clustviz.chameleon.graphtools) minPTSdist() (in module clustviz.optics) module clustviz clustviz.agglomerative clustviz.birch clustviz.chameleon clustviz.chameleon.chameleon clustviz.chameleon.chameleon2 clustviz.chameleon.graphtools clustviz.clara clustviz.clarans clustviz.cure clustviz.dbscan clustviz.denclue clustviz.optics clustviz.pam clustviz.utils

N

near_with_cube() (in module clustviz.denclue)

near_without_cube() (in module clustviz.denclue)

O

OPTICS() (in module clustviz.optics)

P

part_graph() (in module clustviz.chameleon.graphtools) plot2d_data() (in module clustviz.chameleon.graphtools) plot2d_graph() (in module clustviz.chameleon.graphtools) plot_3d_both() (in module clustviz.denclue) plot_3d_or_contour() (in module clustviz.denclue) plot_birch_leaves() (in module clustviz.birch) plot_clust() (in module clustviz.optics) plot_clust_DB() (in module clustviz.dbscan) plot_clust_dict() (in module clustviz.denclue) plot_grid_rect() (in module clustviz.denclue) plot_infl() (in module clustviz.denclue) plot_min_bound_rect() (in module clustviz.denclue) plot_pam() (in module clustviz.pam)

plot_pam_mod() (in module clustviz.clara) plot_results_cure() (in module clustviz.cure) plot_tree_clarans() (in module clustviz.clarans) plot_tree_fin() (in module clustviz.birch) point_plot() (in module clustviz.optics) point_plot_mod() (in module clustviz.agglomerative) (in module clustviz.dbscan) point_plot_mod2() (in module clustviz.cure) pop_cubes() (in module clustviz.denclue) pre_part_graph() (in module clustviz.chameleon.graphtools) prepro_edge() (in module clustviz.chameleon.chameleon2) process() (birch method) (clarans method)

R

reach_dist() (in module clustviz.optics) reach_plot() (in module clustviz.optics) rebuild_labels() (in module clustviz.chameleon.chameleon) relative_closeness() (in module clustviz.chameleon.chameleon)

relative_closeness2() (in module clustviz.chameleon.chameleon2) relative_interconnectivity() (in module clustviz.chameleon.chameleon) relative_interconnectivity2() (in module clustviz.chameleon.chameleon2) return_tree() (birch method) rho() (in module clustviz.chameleon.chameleon2)

S

scan_neigh1() (in module clustviz.optics) scan_neigh1_mod() (in module clustviz.dbscan) scan_neigh2() (in module clustviz.optics) sel_rep() (in module clustviz.cure) sel_rep_fast() (in module clustviz.cure)

show_feature_distribution() (cftree method) sl_dist() (in module clustviz.agglomerative) square_wave_density() (in module clustviz.denclue) square_wave_gradient() (in module clustviz.denclue) square_wave_influence() (in module clustviz.denclue)

U

update_mat() (in module clustviz.agglomerative)

update_mat_cure() (in module clustviz.cure)

W

w_int_closeness() (in module clustviz.chameleon.chameleon2)